phenoTest (version 1.20.0)

summary.gseaData: Obtain a data.frame with the pvalues and fdr for all signatures and variables of a gseaData object.

Description

Builds a data.frame object that can easily be written to a csv file containing the ES, NES, pval.ES, pval.NES and FDR.

Usage

summary.gseaData(object,...)

Arguments

object

object of class gseaData,

...

Arguments to be passed to summary.

References

Aravind Subramanian, (October 25, 2005) Gene Set Enrichment Analysis. www.pnas.org/cgi/doi/10.1073/pnas.0506580102

See Also

summary.gseaSignificanceSign, summary.gseaSignificanceVar

Examples

#for examples see the help file of gseaSigntaures: ?gsea