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phenoTest (version 1.20.0)

summary.gseaSignificance: Obtain a data.frame with the pvalues and fdr for all signatures and variables of a gseaSignificanceSign or gseaSignificanceVar object.

Description

Builds a data.frame object that can easily be written to a csv file containing the ES, NES, pval.ES, pval.NES and FDR.

Usage

summary.gseaSignificanceSign(object,...)

Arguments

object
object of class gseaSignificanceSign or gseaSignificanceVar.
...
Arguments to be passed to summary.

References

Aravind Subramanian, (October 25, 2005) Gene Set Enrichment Analysis. www.pnas.org/cgi/doi/10.1073/pnas.0506580102

Examples

Run this code
#for examples see the help file of gseaSigntaures: ?gseaSignatures

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