f_goal

A curve fitting function, can be one of <code>doubleAG</code>,
<code>doubleLog.Beck</code>, <code>doubleLog.Elmore</code>, <code>doubleLog.Gu</code>,
<code>doubleLog.Klos</code>, <code>doubleLog.Zhang</code>, see <code><a rd-options="=Logistic" href="/link/Logistic()?package=phenofit&version=0.3.2&to=%3DLogistic" data-mini-rdoc="=Logistic::Logistic()">Logistic()</a></code>
for details.

Numeric vector, vegetation index time-series

Numeric vector, <code>Date</code> variable

pred

(optional) Numeric vector, weights of <code>y</code>. If not specified,
weights of all <code>NA</code> values will be <code>wmin</code>, the others will be 1.0.

<code>ymin, ymax</code>, which is used to force <code>ypred</code> in the
range of <code>ylu</code>.

Goal function of fine curve fitting methods

The merits of 'TIMESAT' and 'phenopix' are adopted. Besides, a simple and
growing season dividing method and a practical snow elimination method
based on Whittaker were proposed. 7 curve fitting methods and 4 phenology
extraction methods were provided. Parameters boundary are considered for
every curve fitting methods according to their ecological meaning.
And 'optimx' is used to select best optimization method for different
curve fitting methods.
Reference:
Kong, D., (2020). R package: A state-of-the-art Vegetation Phenology extraction
package, phenofit version 0.3.1, <doi:10.5281/zenodo.5150204>;
Kong, D., Zhang, Y., Wang, D., Chen, J., & Gu, X. (2020). Photoperiod Explains
the Asynchronization Between Vegetation Carbon Phenology and Vegetation Greenness
Phenology. Journal of Geophysical Research: Biogeosciences, 125(8), e2020JG005636.
<doi:10.1029/2020JG005636>;
Kong, D., Zhang, Y., Gu, X., & Wang, D. (2019). A robust method for reconstructing
global MODIS EVI time series on the Google Earth Engine.
ISPRS Journal of Photogrammetry and Remote Sensing, 155, 13–24;
Zhang, Q., Kong, D., Shi, P., Singh, V.P., Sun, P., 2018. Vegetation phenology
on the Qinghai-Tibetan Plateau and its response to climate change (1982–2013).
Agric. For. Meteorol. 248, 408–417. <doi:10.1016/j.agrformet.2017.10.026>.

Dongdong Kong

phenofit

Extract Remote Sensing Vegetation Phenology

Mingzhong Xiao

Yongqiang Zhang

Xihui Gu

Jianjian Cui

f_goal function

<dl><dt>par</dt>
<dd>A vector of parameters</dd>
<dt>fun</dt>
<dd>A curve fitting function, can be one of <code>doubleAG</code>,
<code>doubleLog.Beck</code>, <code>doubleLog.Elmore</code>, <code>doubleLog.Gu</code>,
<code>doubleLog.Klos</code>, <code>doubleLog.Zhang</code>, see <code><a href="/link/Logistic()?package=phenofit&version=0.3.2" data-mini-rdoc="phenofit::Logistic()">Logistic()</a></code>
for details.</dd>
<dt>y</dt>
<dd>Numeric vector, vegetation index time-series</dd>
<dt>t</dt>
<dd>Numeric vector, <code>Date</code> variable</dd>
<dt>pred</dt>
<dd>Numeric Vector, predicted values</dd>
<dt>w</dt>
<dd>(optional) Numeric vector, weights of <code>y</code>. If not specified,
weights of all <code>NA</code> values will be <code>wmin</code>, the others will be 1.0.</dd>
<dt>ylu</dt>
<dd><code>ymin, ymax</code>, which is used to force <code>ypred</code> in the
range of <code>ylu</code>.</dd>
<dt>...</dt>
<dd>others will be ignored.</dd></dl>

Arguments

Goal function of fine curve fitting methods — f_goal

<dl>

<dt>par</dt>
<dd>A vector of parameters</dd>


<dt>fun</dt>
<dd>A curve fitting function, can be one of <code>doubleAG</code>,
<code>doubleLog.Beck</code>, <code>doubleLog.Elmore</code>, <code>doubleLog.Gu</code>,
<code>doubleLog.Klos</code>, <code>doubleLog.Zhang</code>, see <code><a href='https://rdrr.io/r/stats/Logistic.html'>Logistic()</a></code>
for details.</dd>


<dt>y</dt>
<dd>Numeric vector, vegetation index time-series</dd>


<dt>t</dt>
<dd>Numeric vector, <code>Date</code> variable</dd>


<dt>pred</dt>
<dd>Numeric Vector, predicted values</dd>


<dt>w</dt>
<dd>(optional) Numeric vector, weights of <code>y</code>. If not specified,
weights of all <code>NA</code> values will be <code>wmin</code>, the others will be 1.0.</dd>


<dt>ylu</dt>
<dd><code>ymin, ymax</code>, which is used to force <code>ypred</code> in the
range of <code>ylu</code>.</dd>


<dt>...</dt>
<dd>others will be ignored.</dd>

</dl>

f_goal: Goal function of fine curve fitting methods

Description

Usage

Value

Arguments

Examples