phenology (version 3.40)

adapt_parameters: Extract the parameters from a set of parameters ton conform on a dataset.

Description

The function "adapt_parameters" extracts the set of parameters to be used for a subset of data. All the uncessary parameters are removed. It can be used when a set of beaches are fitted first and after only one of these beaches is fitted again.

Usage

adapt_parameters(data = stop("Datasets is mandatory for this function"),
    parameters = stop("Set of parameters is mandatory for this function"))

Arguments

parameters

A set of parameters

data

A dataset of counts

Value

• Return the set of parameters

Details

adapt_parameters get the fitted parameters from a result object.

Examples

library(phenology)
# Read a file with data
# Gratiot<-read.delim("http://max2.ese.u-psud.fr/epc/conservation/BI/Complete.txt", , header=FALSE)
data(Gratiot)
# Generate a formatted list nammed data_Gratiot
data_Gratiot<-add_format(origin=NULL, add=Gratiot, name="Complete", reference=as.Date("2001-01-01"), format="%d/%m/%Y")
# Generate initial points for the optimisation
parg<-par_init(data_Gratiot, parametersfixed=NULL)
# Add unnecessary parameters to parg
parg <- c(parg, Max_dummybeach=2, Peak_dummybeach=123)
# Extract the fitted parameters
parg1<-adapt_parameters(data=data_Gratiot, parameters=parg)