phenology (version 3.40)

plot.phenology: Plot the phenology from a result.

Description

The function plot.phenology plots the phenology graph from a result.

Usage

## S3 method for class 'phenology':
plot(x, ..., data = NULL,
    parameters = NULL, parametersfixed = NA, pdf = FALSE,
    series = "all", moon = FALSE, help = FALSE)

Arguments

x

A result file generated by fit_phenology

...

Parameters used by plot_phenology

data

A dataset generated by add_format

pdf

TRUE or FALSE, indicates if a pdf file is generated.

parametersfixed

Set of fixed parameters

parameters

Set of parameters to be changed

series

Number of series to be analyzed or 'all'

moon

If TRUE, the moon phase is ploted. Default is FALSE

help

If TRUE, an help is displayed

Value

• Return A list of lists with formated outputs For each site: $site=name of the site $estimate1=Estimation of counts not taking into account the observations $sd1=The SD of estimation1 $estimate2=Estimation of counts taking into account the observations $sd2=The SD of estimation2

Details

plot.phenology plots the phenology.

Examples

library(phenology)
# Read a file with data
# Gratiot<-read.delim("http://max2.ese.u-psud.fr/epc/conservation/BI/Complete.txt", , header=FALSE)
data(Gratiot)
# Generate a formatted list nammed data_Gratiot
data_Gratiot<-add_format(origin=NULL, add=Gratiot, name="Complete", reference=as.Date("2001-01-01"), format="%d/%m/%Y")
# Generate initial points for the optimisation
parg<-par_init(data_Gratiot, parametersfixed=NULL)
# Run the optimisation
# result_Gratiot<-fit_phenology(data=data_Gratiot, parametersfit=parg, parametersfixed=NULL, trace=1)
data(result_Gratiot)
# Plot the phenology and get some stats
output<-plot(result_Gratiot, pdf=FALSE)