Fit a model of Internesting Period for marine turtles.
Estimates the pattern of internesting intervals for a set of parameters.
Calculate a table of probabilities of ECF and OCF.
Calculate the confidence interval of the results of fitRMU()
Non-biased exponential regression
Automatic fit for phenology and tests
Return a posterior remigration interval.
Calculate a table of probabilities of ECF and OCF.
Transform a set of parameters from Begin End to LengthB LengthE.
Leatherback nest counts from Gratiot et al. (2006) Figure 1
Transform a set of parameters from MinB and MinE to Min
Transform a set of parameters from Year to global effect, or reverse
Return the cumulative rate of tag loss.
Predict the possible clutch number based on observed Internesting Period.
Bayesian model of tag loss using a CMR database.
Transform a set of parameters from LengthB LengthE to Begin End.
Generates set of parameters to be used with Tagloss_mcmc()
Return the -log likelihood of a set of individuals under a model of tagloss.
Return the maximum number of days an individual has been observed in a dataset.
Return a list with the number of days for different kinds of individuals are seen.
Add standard error for a fixed parameter.
Extract the parameters from a set of parameters to be used with another dataset.
Return an expected remigration interval.
Format a CMR dataset into a file that fitCF can use.
Generates set of parameters to be used with phenology_MHmcmc()
Plot a result of clutch frequency fit.
Return a remigration interval.
Generate set of parameters to be used with fitCF_MHmcmc()
Return Log Likelihood of a fit done using fitCF
Calculate the -log likelihood of data within a model.
Adjust incomplete timeseries with various constraints.
Create the data to be used with fitRMU() for a summary(phenology).
Plot a TableECFOCF dataset.
Run the Metropolis-Hastings algorithm for data
Plot a likelihood map with Delta and Phi varying.
Plot the phenology from a result.
Run the Metropolis-Hastings algorithm for ECFOCF data
Fit a model of Clutch Frequency for marine turtles.
Transform a set of parameters from LengthB LengthE format to Length
Transform a set of parameters from Length format to LengthB LengthE
Format a CMR dataset into a file that Tagloss_L can use.
fit a model of tag loss using a CMR database.
Generates set of parameters to be used with fitRMU_MHmcmc()
Run the Metropolis-Hastings algorithm for RMU.data
Plot the daily rate of tag loss.
Generate a set of data to test Clutch Frequency for marine turtles.
Database of tagged marine turtles in 2002
Return a list with the number of days different kinds of individuals are seen.
Estimate the likelihood of timeseries based on a set of parameters.
Return the daily rate of tag loss.
Return Log Likelihood of a fit generated by Tagloss_fit
Create a new dataset or add a timeserie to a previous dataset.
Generate a likelihood map varying Phi and Delta.
Print the information from a ouput x.
Print the summary information from a ouput object.
Print information on a phenologymap object.
Removes site information from a set of parameters.
Return Log Likelihood of a fit generated by fit_phenology
Shift sinusoid information.
Likelihood map of Leatherback nest counts
Result of the mcmc for Leatherback nest counts
Print the result information from a IP object.
Extract the set of parameters from a result object.
Model of tagloss based on Rivalan data
Print the result information from a result x.
Return Log Likelihood of a fit generated by fitRMU
Fit the phenology parameters to timeseries of counts.
Plot a likelihood lineplot obtained after map_phenology.
Generate a set of fixed parameters for series with only 0 counts
Print information on a phenologymap object.
Plot the best likelihood for fixed Phi value.
Result of the fit of Leatherback nest counts
Transform a set of parameters from Min, MinB or MinE to PMin, PminB or PminE, or reverse
Result of the fit of Leatherback nest counts
Print the result information from a result object.
Tools to Manage a Parametric Function that Describes Phenology and More
Calculate initial set of parameters.
Database of leatherback CMR in French Guiana
Plot data used for tagloss analysis.
Plot the synthesis of RMU fit.
Run a shiny application for basic functions of phenology package
Plot the remigration intervals.
Plot a result of Internesting Period fit or data.
Result of the fit of Leatherback nest counts
Result of the fit of Leatherback nest counts