sepsis

<p>A fully synthetic data set with variables needed for examples and documentation
of the Phoenix Sepsis Criteria.</p>

datasets

Implementation of the Phoenix and Phoenix-8 Sepsis Criteria as
described in "Development and Validation of the Phoenix Criteria for
Pediatric Sepsis and Septic Shock" by Sanchez-Pinto, Bennett, DeWitt,
Russell et al. (2024) <doi:10.1001/jama.2024.0196> (Drs. Sanchez-Pinto
and Bennett contributed equally to this manuscript; Dr. DeWitt and Mr.
Russell contributed equally to the manuscript), "International Consensus
Criteria for Pediatric Sepsis and Septic Shock" by Schlapbach, Watson,
Sorce, Argent, et al. (2024) <doi:10.1001/jama.2024.0179> (Drs Schlapbach,
Watson, Sorce, and Argent contributed equally) and the application note
"phoenix: an R package and Python module for calculating the Phoenix
pediatric sepsis score and criteria" by DeWitt, Russell, Rebull,
Sanchez-Pinto, and Bennett (2024) <doi:10.1093/jamiaopen/ooae066>.

Peter DeWitt

phoenix

The Phoenix Pediatric Sepsis and Septic Shock Criteria

Seth Russell

Meg Rebull

Tell Bennett

L. Nelson Sanchez-Pinto

sepsis function

<p>a data.frame with 20 rows and 27 columns</p>
<table class="table">
<tr><td>[,  1]</td><td>pid</td><td>patient identification number</td></tr>
<tr><td>[,  2]</td><td>age</td><td>age in months</td></tr>
<tr><td>[,  3]</td><td>fio2</td><td>fraction of inspired oxygen</td></tr>
<tr><td>[,  4]</td><td>pao2</td><td>partial pressure of oxygen in arterial blood (mmHg)</td></tr>
<tr><td>[,  5]</td><td>spo2</td><td>pulse oximetry</td></tr>
<tr><td>[,  6]</td><td>vent</td><td>indicator for invasive mechanical ventilation</td></tr>
<tr><td>[,  7]</td><td>gcs_total</td><td>total Glasgow Coma Scale</td></tr>
<tr><td>[,  8]</td><td>pupil</td><td>character vector reporting if pupils are reactive or fixed.</td></tr>
<tr><td>[,  9]</td><td>platelets</td><td>platelets measured in 1,000 / microliter</td></tr>
<tr><td>[, 10]</td><td>inr</td><td>international normalized ratio</td></tr>
<tr><td>[, 11]</td><td>d_dimer</td><td>D-dimer; units of mg/L FEU</td></tr>
<tr><td>[, 12]</td><td>fibrinogen</td><td>units of mg/dL</td></tr>
<tr><td>[, 13]</td><td>dbp</td><td>diastolic blood pressure (mmHg)</td></tr>
<tr><td>[, 14]</td><td>sbp</td><td>systolic blood pressure (mmHg)</td></tr>
<tr><td>[, 15]</td><td>lactate</td><td>units of mmol/L</td></tr>
<tr><td>[, 16]</td><td>dobutamine</td><td>indicator for receiving systemic dobutamine</td></tr>
<tr><td>[, 17]</td><td>dopamine</td><td>indicator for receiving systemic dopamine</td></tr>
<tr><td>[, 18]</td><td>epinephrine</td><td>indicator for receiving systemic epinephrine</td></tr>
<tr><td>[, 19]</td><td>milrinone</td><td>indicator for receiving systemic milrinone</td></tr>
<tr><td>[, 20]</td><td>norepinephrine</td><td>indicator for receiving systemic norepinephrine</td></tr>
<tr><td>[, 21]</td><td>vasopressin</td><td>indicator for receiving systemic vasopressin</td></tr>
<tr><td>[, 22]</td><td>glucose</td><td>units of mg/dL</td></tr>
<tr><td>[, 23]</td><td>anc</td><td>units of 1,000 cells per cubic millimeter</td></tr>
<tr><td>[, 24]</td><td>alc</td><td>units of 1,000 cells per cubic millimeter</td></tr>
<tr><td>[, 25]</td><td>creatinine</td><td>units of mg/dL</td></tr>
<tr><td>[, 26]</td><td>bilirubin</td><td>units of mg/dL</td></tr>
<tr><td>[, 27]</td><td>alt</td><td>units of IU/L</td></tr>
</table><p></p><p></p>

Format

sepsis — sepsis

<p>a data.frame with 20 rows and 27 columns</p>
<table class='table'>
<tr><td>[,  1]</td><td>pid</td><td>patient identification number</td></tr>
<tr><td>[,  2]</td><td>age</td><td>age in months</td></tr>
<tr><td>[,  3]</td><td>fio2</td><td>fraction of inspired oxygen</td></tr>
<tr><td>[,  4]</td><td>pao2</td><td>partial pressure of oxygen in arterial blood (mmHg)</td></tr>
<tr><td>[,  5]</td><td>spo2</td><td>pulse oximetry</td></tr>
<tr><td>[,  6]</td><td>vent</td><td>indicator for invasive mechanical ventilation</td></tr>
<tr><td>[,  7]</td><td>gcs_total</td><td>total Glasgow Coma Scale</td></tr>
<tr><td>[,  8]</td><td>pupil</td><td>character vector reporting if pupils are reactive or fixed.</td></tr>
<tr><td>[,  9]</td><td>platelets</td><td>platelets measured in 1,000 / microliter</td></tr>
<tr><td>[, 10]</td><td>inr</td><td>international normalized ratio</td></tr>
<tr><td>[, 11]</td><td>d_dimer</td><td>D-dimer; units of mg/L FEU</td></tr>
<tr><td>[, 12]</td><td>fibrinogen</td><td>units of mg/dL</td></tr>
<tr><td>[, 13]</td><td>dbp</td><td>diastolic blood pressure (mmHg)</td></tr>
<tr><td>[, 14]</td><td>sbp</td><td>systolic blood pressure (mmHg)</td></tr>
<tr><td>[, 15]</td><td>lactate</td><td>units of mmol/L</td></tr>
<tr><td>[, 16]</td><td>dobutamine</td><td>indicator for receiving systemic dobutamine</td></tr>
<tr><td>[, 17]</td><td>dopamine</td><td>indicator for receiving systemic dopamine</td></tr>
<tr><td>[, 18]</td><td>epinephrine</td><td>indicator for receiving systemic epinephrine</td></tr>
<tr><td>[, 19]</td><td>milrinone</td><td>indicator for receiving systemic milrinone</td></tr>
<tr><td>[, 20]</td><td>norepinephrine</td><td>indicator for receiving systemic norepinephrine</td></tr>
<tr><td>[, 21]</td><td>vasopressin</td><td>indicator for receiving systemic vasopressin</td></tr>
<tr><td>[, 22]</td><td>glucose</td><td>units of mg/dL</td></tr>
<tr><td>[, 23]</td><td>anc</td><td>units of 1,000 cells per cubic millimeter</td></tr>
<tr><td>[, 24]</td><td>alc</td><td>units of 1,000 cells per cubic millimeter</td></tr>
<tr><td>[, 25]</td><td>creatinine</td><td>units of mg/dL</td></tr>
<tr><td>[, 26]</td><td>bilirubin</td><td>units of mg/dL</td></tr>
<tr><td>[, 27]</td><td>alt</td><td>units of IU/L</td></tr>
</table>



sepsis: sepsis

Description

Usage

Arguments

Format

[, 1]	pid	patient identification number
[, 2]	age	age in months
[, 3]	fio2	fraction of inspired oxygen
[, 4]	pao2	partial pressure of oxygen in arterial blood (mmHg)
[, 5]	spo2	pulse oximetry
[, 6]	vent	indicator for invasive mechanical ventilation
[, 7]	gcs_total	total Glasgow Coma Scale
[, 8]	pupil	character vector reporting if pupils are reactive or fixed.
[, 9]	platelets	platelets measured in 1,000 / microliter
[, 10]	inr	international normalized ratio
[, 11]	d_dimer	D-dimer; units of mg/L FEU
[, 12]	fibrinogen	units of mg/dL
[, 13]	dbp	diastolic blood pressure (mmHg)
[, 14]	sbp	systolic blood pressure (mmHg)
[, 15]	lactate	units of mmol/L
[, 16]	dobutamine	indicator for receiving systemic dobutamine
[, 17]	dopamine	indicator for receiving systemic dopamine
[, 18]	epinephrine	indicator for receiving systemic epinephrine
[, 19]	milrinone	indicator for receiving systemic milrinone
[, 20]	norepinephrine	indicator for receiving systemic norepinephrine
[, 21]	vasopressin	indicator for receiving systemic vasopressin
[, 22]	glucose	units of mg/dL
[, 23]	anc	units of 1,000 cells per cubic millimeter
[, 24]	alc	units of 1,000 cells per cubic millimeter
[, 25]	creatinine	units of mg/dL
[, 26]	bilirubin	units of mg/dL
[, 27]	alt	units of IU/L