These functions implement the equivalent of replace() but for spectral objects instead of vectors.
clean(x, range, range.s.data, fill, ...)# S3 method for default
clean(x, range, range.s.data, fill, ...)
# S3 method for source_spct
clean(x, range = x, range.s.data = c(0, NA),
fill = range.s.data, unit.out = getOption("photobiology.radiation.unit",
default = "energy"), ...)
# S3 method for filter_spct
clean(x, range = x, range.s.data = NULL,
fill = range.s.data, qty.out = getOption("photobiology.filter.qty",
default = "transmittance"), ...)
# S3 method for reflector_spct
clean(x, range = x, range.s.data = c(0, 1),
fill = range.s.data, ...)
# S3 method for response_spct
clean(x, range = x, range.s.data = c(0, NA),
fill = range.s.data, unit.out = getOption("photobiology.radiation.unit",
default = "energy"), ...)
# S3 method for cps_spct
clean(x, range = x, range.s.data = c(0, NA),
fill = range.s.data, ...)
# S3 method for raw_spct
clean(x, range = x, range.s.data = c(NA_real_, NA_real_),
fill = range.s.data, ...)
# S3 method for generic_spct
clean(x, range = x, range.s.data = c(NA_real_,
NA_real_), fill = range.s.data, col.names, ...)
# S3 method for source_mspct
clean(x, range = NULL, range.s.data = c(0, NA),
fill = range.s.data, unit.out = getOption("photobiology.radiation.unit",
default = "energy"), ...)
# S3 method for filter_mspct
clean(x, range = NULL, range.s.data = NULL,
fill = range.s.data, qty.out = getOption("photobiology.filter.qty",
default = "transmittance"), ...)
# S3 method for reflector_mspct
clean(x, range = NULL, range.s.data = c(0, 1),
fill = range.s.data, ...)
# S3 method for response_mspct
clean(x, range = NULL, range.s.data = c(0, NA),
fill = range.s.data, unit.out = getOption("photobiology.radiation.unit",
default = "energy"), ...)
# S3 method for cps_mspct
clean(x, range = NULL, range.s.data = c(0, NA),
fill = range.s.data, ...)
# S3 method for raw_mspct
clean(x, range = NULL, range.s.data = c(0, NA),
fill = range.s.data, ...)
# S3 method for generic_mspct
clean(x, range = x, range.s.data = c(NA_real_,
NA_real_), fill = range.s.data, col.names, ...)
an R object
numeric vector of wavelengths
numeric vector of length two giving the allowable range for the spectral data.
numeric vector of length 1 or 2, giving the replacement values to use at each extreme of the range.
currently ignored
character string with allowed values "energy", and "photon", or its alias "quantum"
character string with allowed values "energy", and "photon", or its alias "quantum"
character The name of the variable to clean
default
: Default for generic function
source_spct
: Replace off-range values in a source spectrum
filter_spct
: Replace off-range values in a filter spectrum
reflector_spct
: Replace off-range values in a reflector spectrum
response_spct
: Replace off-range values in a response spectrum
cps_spct
: Replace off-range values in a counts per second spectrum
raw_spct
: Replace off-range values in a raw counts spectrum
generic_spct
: Replace off-range values in a generic spectrum
source_mspct
:
filter_mspct
:
reflector_mspct
:
response_mspct
:
cps_mspct
:
raw_mspct
:
generic_mspct
: