photobiology (version 0.9.7)

absorbance: Absorbance

Description

Function to calculate the mean, total, or other summary of absorbance for spectral data stored in a filter_spct or in an object_spct.

Usage

absorbance(spct, w.band, quantity, wb.trim, use.hinges, ...)

## S3 method for class 'default':
absorbance(spct, w.band, quantity, wb.trim, use.hinges, ...)

## S3 method for class 'filter_spct':
absorbance(spct, w.band = NULL, quantity = "average",
  wb.trim = getOption("photobiology.waveband.trim", default = TRUE),
  use.hinges = getOption("photobiology.use.hinges", default = NULL), ...)

## S3 method for class 'object_spct':
absorbance(spct, w.band = NULL, quantity = "average",
  wb.trim = getOption("photobiology.waveband.trim", default = TRUE),
  use.hinges = getOption("photobiology.use.hinges", default = NULL), ...)

## S3 method for class 'filter_mspct':
absorbance(spct, w.band = NULL, quantity = "average",
  wb.trim = getOption("photobiology.waveband.trim", default = TRUE),
  use.hinges = getOption("photobiology.use.hinges", default = NULL), ...,
  idx = !is.null(names(spct)))

## S3 method for class 'object_mspct':
absorbance(spct, w.band = NULL, quantity = "average",
  wb.trim = getOption("photobiology.waveband.trim", default = TRUE),
  use.hinges = getOption("photobiology.use.hinges", default = NULL), ...,
  idx = !is.null(names(spct)))

Arguments

spct

an R object

w.band

waveband or list of waveband objects The waveband(s) determine the region(s) of the spectrum that are summarized.

quantity

character

wb.trim

logical Flag indicating if wavebands crossing spectral data boundaries are trimmed or ignored

use.hinges

logical Flag indicating whether to use hinges to reduce interpolation errors

...

other arguments (possibly ignored)

idx

logical whether to add a column with the names of the elements of spct

Methods (by class)

• default: Default for generic function
• filter_spct: Specialization for filter spectra
• object_spct: Specialization for object spectra
• filter_mspct: Calculates absorbance from afilter_mspct
• object_mspct: Calculates absorbance from aobject_mspct

Examples

absorbance(polyester.spct, new_waveband(400,700))
absorbance(yellow_gel.spct, new_waveband(400,700))