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photobiologyWavebands

Package photobiologyWavebands is a set of functions and data to be used together with package photobiology for calculating derived quantities from spectral data. Unweighted derived quantities represent summaries of a given range of wavelengths, which can be expressed either in energy or photon based units. Derived biologically effective quantities are used to quantify the effect of radiation on different organisms or processes within organisms. These effects can range from damage to perception of informational light signals.

The definitions cover most unweighted wavebands in common use, and in addition some weighting functions used in the calculation of effective irradiances and exposures. The current version of the package puts emphasis on plant responses, but in the future it will be expanded to included responses relevant to other groups of organisms.

Please, see the web site r4photobiology for details on other packages available as part of the suite, and on how to install them.

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Version

Install

install.packages('photobiologyWavebands')

Monthly Downloads

346

Version

0.4.1

License

GPL (>= 3)

Maintainer

Pedro Aphalo

Last Published

August 1st, 2016

Functions in photobiologyWavebands (0.4.1)

CIE_q_fun

Gives values for the erythemal BSWF as a function of wavelength
CIE1951_scotopic_lef.spct

Luminous efficiency function (scotopic human vision)
CH4_e_fun

Gives values for the CH4 production from pectin BSWF as a function of wavelength
Blue

Definition of list of VIS wavebands
CH4_q_fun

Gives values for the CH4 production from pectin BSWF as a function of wavelength
CH4

Definition of CH4 production from pectin weighted waveband
CIE1924_lef.spct

CIE1924 luminous efficiency function (photopic human vision)
CIE2008_lef2deg.spct

CIE2008 luminous efficiency function (2-deg) (photopic human vision)
CIE

Definition of CIE weighted waveband
CIE_e_fun

Gives values for the erythemal BSWF as a function of wavelength
DNA_GM

Definition of DNA damage (SETLOW) weighted waveband
DNA_P_q_fun

Gives values for plant DNA BSWF (Quaite) as a function of wavelength
DNA_N_q_fun

Gives values for naked DNA BSWF (SETLOW) as a function of wavelength
Far_red

Definition of FR waveband
DNA_N

Definition of DNA damage (SETLOW) weighted waveband
DNA.P

Definition of DNA damage (Quaite) weighted waveband
DNA_P

Definition of DNA damage (Quaite) weighted waveband
DNA.N

Definition of DNA damage (SETLOW) weighted waveband
DNA.GM

Definition of DNA damage (SETLOW) weighted waveband
DNA_GM_q_fun

Gives values for naked DNA BSWF (SETLOW) as a function of wavelength
GEN_T_q_fun

Gives values for GPAS BSWF (Timijan's formulation) as a function of wavelength
GEN_G_q_fun

Gives values for GPAS BSWF (Green's formulation) as a function of wavelength
GEN_M_q_fun

Gives values for GPAS BSWF (Micheletti's formulation) as a function of wavelength
GEN_M

Definition of GPAS (Micheletti) weighted waveband
GEN_G

Definition of GPAS (Green) weighted waveband
FLAV_q_fun

Gives values for FLAV BSWF (flavonoid) as a function of wavelength
GEN.M

Definition of GPAS (Micheletti) weighted waveband
FLAV

Definition of FLAV BSWF flavonoids
GEN.G

Definition of GPAS (Green) weighted waveband
GEN_T

Definition of GPAS (Timijan) weighted waveband
PG_q_fun

Gives values for the Plant Growth BSWF as a function of wavelength
GEN.T

Definition of GPAS (Timijan) weighted waveband
Green

Definition of green waveband
photobiologyWavebands-package

Waveband Definitions for 'UV', 'VIS', and 'IR' Radiation
ICNIRP_e_fun

Values for the ICNIRP BSWF as a function of wavelength
photopic_sensitivity

Photopic sensitivity of the human eye
Orange

Definition of orange waveband
PG

Definition of PG weighted waveband
ICNIRP

Definition of ICNIRP 2004 weighted waveband
PAR

Definition of PAR waveband
Plant_bands

Definition of list of wavebands used in plant biology
Red

Definition of red waveband
UV_bands

Definition of list of UV wavebands
Purple

Definition of purple waveband
scotopic_sensitivity

Scotopic sensitivity of the human eye
SetlowTUV.spct

Setlow's action spectrum for DNA damage
UV

Definition of UV waveband
UVC

Definition of UV-C waveband
UVB

Definition of UV-B waveband
UVA

Definition of UV-A waveband
VIS_bands

Definition of list of VIS wavebands
VIS

Definition of VIS waveband
Yellow

Definition of yellow waveband
UVI

Calculate UVI from spectral irradiance
UVI_wb

Definition of CIE weighted waveband