FMD_2007

DNA sequences and sampling days of FMD virus from 10 farms in the UK (11 sequences)

datasets

Implementation the outbreak analysis method described by
Klinkenberg et al (2017) <doi:10.1371/journal.pcbi.1005495>.
Simulate outbreaks, analyse datasets by creating samples from the
posterior distribution with a Markov-Chain Monte Carlo sampler,
and summarize the output.

Don Klinkenberg

phybreak

Analysis of Outbreaks with Sequence Data

FMD_2007 function

A list with two elements:<dl class="dl-horizontal">
 <dt>sequences</dt><dd>the sequences (class <code>DNAbin</code>)</dd>
 <dt>dates</dt><dd>the sampling days (class <code>Date</code>)</dd>
</dl>

Format

Foot-and-Mouth Disease outbreak (2007) — FMD_2007

A list with two elements:<dl class='dl-horizontal'>
 <dt>sequences</dt><dd>the sequences (class <code>DNAbin</code>)</dd>
 <dt>dates</dt><dd>the sampling days (class <code>Date</code>)</dd>
</dl>

FMD_2007: Foot-and-Mouth Disease outbreak (2007)

Description

Usage

Arguments

Format

References