.Color

Color themes as used in the package <pkg>lattice</pkg>.

data

Phylogenetic clustering (phyloclustering) is an
        evolutionary Continuous Time Markov Chain model-based approach
        to identify population structure from molecular data without
        assuming linkage equilibrium. The package phyclust (Chen 2011)
        provides a convenient implementation of phyloclustering for DNA
        and SNP data, capable of clustering individuals into
        subpopulations and identifying molecular sequences
        representative of those subpopulations. It is designed in C for
        performance, interfaced with R for visualization, and
        incorporates other popular open source programs including ms
        (Hudson 2002), seq-gen (Rambaut and Grassly 1997),
        Hap-Clustering (Tzeng 2005) and PAML baseml (Yang 1997, 2007),
        for simulating data, additional analyses, and searching the
        best tree.  See the phyclust website for more information,
        documentations and examples.

WeiChen Chen

phyclust

Phylogenetic Clustering (Phyloclustering)

.Color function

A character vector contains colors used in plots to identify clusters.

.Color: Colors for Identifying Clusters in Plots

Description

Usage

Arguments

format

References

See Also

Examples