phylobase (version 0.8.10)

plotOneTree: Plot a phylo4 object

Description

Plots the phylogenetic tree contained in a phylo4 or phylo4d object.

Usage

plotOneTree(
  xxyy,
  type,
  show.tip.label,
  show.node.label,
  edge.color,
  node.color,
  tip.color,
  edge.width,
  rot
)

Value

Returns no values, function invoked for the plotting side effect.

Arguments

xxyy

A list created by the phyloXXYY function

type

A character string indicating the shape of plotted tree

show.tip.label

Logical, indicating whether tip labels should be shown

show.node.label

Logical, indicating whether node labels should be shown

edge.color

A vector of colors in the order of edges(phy)

node.color

A vector of colors indicating the colors of the node labels

tip.color

A vector of colors indicating the colors of the tip labels

edge.width

A vector in the order of edges(phy) indicating the widths of edge lines

rot

Numeric indicating the rotation of the plot in degrees

Author

Peter Cowan pdc@berkeley.edu

See Also

treePlot, phyloXXYY

Examples

Run this code
library(grid)
data(geospiza)
grid.newpage()
xxyy <- phyloXXYY(geospiza)
plotOneTree(xxyy, type = 'phylogram',
  show.tip.label = TRUE, show.node.label = TRUE,
  edge.color = 'black', node.color = 'orange', tip.color = 'blue',
  edge.width = 1, rot = 0
)

grid.newpage()
pushViewport(viewport(w = 0.8, h = 0.8))
plotOneTree(xxyy, type = 'phylogram',
  show.tip.label = TRUE, show.node.label = TRUE,
  edge.color = 'black', node.color = 'orange', tip.color = 'blue',
  edge.width = 1, rot = 0
)
popViewport()

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