phylobase (version 0.8.4)

phylobase.options: Set or return options of phylobase

Description

Provides a mean to control the validity of phylobase objects such as singletons, reticulated trees, polytomies, etc.

Usage

phylobase.options(...)

Arguments

…

a list may be given as the only argument, or any number of arguments may be in the name=value form, or no argument at all may be given. See the Value and Details sections for explanation.

Value

A list with the updated values of the parameters. If arguments are provided, the returned list is invisible.

Details

The parameter values set via a call to this function will remain in effect for the rest of the session, affecting the subsequent behavior of phylobase.

Examples

# NOT RUN {
phylobase.options(poly="fail")
# subsequent trees with polytomies will fail the validity check
# }
# NOT RUN {
# }

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