phylodyn (version 0.9.0)

plot_mrw: Plot Mean Relative Widths

Description

Plot Mean Relative Widths

Usage

plot_mrw(BNPR_outs, traj = NULL, xlim = NULL, ylim = NULL, nbreaks = 40,
  ltys = 1, lwds = 2, cols = "black", xlab = "Time", xmarline = 3,
  axlabs = NULL, ymin_zero = FALSE, ylab = "Mean Relative Width",
  main = "", heatmaps = TRUE, heatmap_labels = FALSE,
  heatmap_labels_side = "right", heatmap_width = 7, legends = NULL,
  legend_place = "topleft", legend_cex = 1, bty = "n", ...)

Arguments

BNPR_outs

one or more outputs of BNPR or BNPR_PS.

traj

function summarizing the true effective population size trajectory.

xlim

numeric x-axis interval.

ylim

numeric y-axis interval.

nbreaks

integer number of bins for sampling heatmap.

ltys

line types for estimated trajectories.

lwds

line widths for estimated trajectories.

cols

colors for estimated trajectories.

xlab

character x-axis label.

xmarline

numeric if not using default x-axis labels, how far to put the labels from the axis.

axlabs

character vector x-axis labels.

ymin_zero

logical

ylab

character y-axis label.

main

character main plot title.

heatmaps

boolean whether to display sampling and coalescent heatmaps.

heatmap_labels

boolean whether to display labels on heatmaps.

heatmap_labels_side

string which side of plot to display heatmaps.

heatmap_width

numeric how wide heatmaps should be.

legends

character legend texts.

legend_place

character location of legend pane. See legend().

legend_cex

numeric expansion factor for legend pane.

bty

integer box type. See legend().

...

additional arguments to be passed onto plot().