Usage
plot_seasonality(BNPR_out, zero_date, start = 0, years = NULL, period = 1,
ylim = NULL, nbreaks = 40, lty = 1, lwd = 2, col_years = "gray",
col_mean = "black", main = "", axlabs = NULL, xlab = "Time",
xmarline = 3, ylab = "Effective Population Size", log_y = TRUE,
heatmaps = TRUE, heatmap_labels = TRUE, heatmap_labels_side = "right",
heatmap_width = 7, legend = NULL, yscale = 1, ...)
Arguments
BNPR_out
output of BNPR or BNPR_PS.
zero_date
numeric which time to present as 0 on graph.
start
numeric when to start displaying data.
years
numeric how many years to count back in time.
period
numeric how long of a period is a "year".
ylim
numeric y-axis interval.
nbreaks
integer number of bins for sampling heatmap.
lty
numeric line type for the estimated trajectory paths.
lwd
numeric line width for the estimated trajectory paths.
col_years
color of year paths.
col_mean
color of mean path.
main
character main plot title.
axlabs
character vector x-axis labels.
xlab
character x-axis label.
xmarline
numeric if not using default x-axis labels, how far to put
the labels from the axis.
ylab
character y-axis label.
log_y
logical whether to log-scale the y-axis.
heatmaps
boolean whether to display sampling and coalescent heatmaps.
heatmap_labels
boolean whether to display labels on heatmaps.
heatmap_labels_side
string which side of plot to display heatmaps.
heatmap_width
numeric how wide heatmaps should be.
legend
character legend text. The defauly, NULL, disables.
yscale
numeric scaling applied to all effective population
calculations.
...
additional arguments to be passed onto plot().