phylodyn (version 0.9.0)

posterior_coal_check: Posterior predictive check for coalescent model

Description

Posterior predictive check for coalescent model

Usage

posterior_coal_check(coal_times, samp_times, n_sampled, logpop, grid,
  cap = NULL)

Arguments

coal_times

numeric vector of coalescent times.

samp_times

numeric vector of sampling times.

n_sampled

integer vector of lineages sampled at each sampling time.

logpop

matrix posterior sample of log-effective population sizes.

grid

numeric grid

cap

integer maximum number of posterior samples to use.