Banza


  This data set was generated by the function PLD_interface.Rd using a phylogeny constructed from the data of Shapiro et al. (2006).
  The command was: names_locations = c("Maui_Nui","Maui_Nui","Maui_Nui","Maui_Nui","Kauai","Kauai","Maui_Nui","Maui_Nui","Maui_Nui","Maui_Nui","Nihoa","Nihoa","Hawaii","Hawaii","Hawaii","Oahu","Oahu","Maui_Nui","Maui_Nui","Oahu","Oahu");
  Banza = PLD_interface(fileTREES=system.file("extdata","tree_Banza.nex.txt",package="phyloland"),fileDATA=system.file("extdata","locations_Banza.txt",package="phyloland"), num_step=10000,freq=10,ess_lim=500,id_filena="Banza",names_locations=names_locations) 


datasets

Phyloland package models a space colonization process mapped onto a phylogeny, it aims at estimating limited dispersal and ecological competitive exclusion in a Bayesian MCMC statistical phylogeographic framework (please refer to phyloland-package help for details.)

Louis Ranjard

phyloland

Modelling Competitive Exclusion and Limited Dispersal in a
Statistical Phylogeographic Framework

Banza function

An object of class ``phyloland" comprising 7 attributes:
<ol>
<li>  trees       1000   multiPhylo list     
    </li>
<li>  locations     41   data.frame list     
    </li>
<li>  tips          21   -none-     character
    </li>
<li>  space         10   -none-     numeric  
    </li>
<li>  index          1   -none-     list     
    </li>
<li>  mcmc           8   -none-     list     
    </li>
<li>  sigma_limit    2   -none-     numeric
    </li>
</ol>

Format

Output generated by phyloland:PLD_interface.Rd

Banza: Banza MCMC output

Description

Usage

Arguments

Format

Source

References