Usage
## S3 method for class 'phylolm':
print(x, digits = max(3, getOption("digits") - 3), ...)
## S3 method for class 'phylolm':
summary(object, ...)
## S3 method for class 'phylolm':
residuals(object,type = c("response"), ...)
## S3 method for class 'phylolm':
predict(object, newdata = NULL, ...)
## S3 method for class 'phylolm':
vcov(object, ...)
## S3 method for class 'phylolm':
logLik(object, ...)
## S3 method for class 'phylolm':
plot(x, ...)Arguments
x
an object of class "phylolm".
object
an object of class "phylolm".
digits
number of digits to show in summary method.
type
Currently, only the "response" type is implemented. It returns the raw residuals, that is, the differences between the observed responses and the predicted values. They are phylogenetically correlated.
newdata
an optional data frame to provide the predictor values at which predictions should be made. If omitted, the fitted values are used. Currently, predictions are made for new species whose placement in the tree is unknown. Only their covariate information is
...
further arguments to methods.