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phylolm (version 2.1)

Phylogenetic Linear Regression

Description

the phylolm package provides functions for fitting phylogenetic linear regression models and phylogenetic logistic regression. The computation uses an algorithm that is linear in the number of tips in the tree. The package also provides functions for simulating continuous or binary traits along the tree.

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Version

Install

install.packages('phylolm')

Monthly Downloads

5,384

Version

2.1

License

GPL (>= 2)

Maintainer

Lam Si Tung Ho

Last Published

June 5th, 2014

Functions in phylolm (2.1)

rTrait

Continuous trait simulation
phylolm-methods

Methods for class 'phylolm'.
phylolm

Phylogenetic Linear Model
phyloglm-methods

Methods for class 'phyloglm'.
pruningwise.distFromRoot

Calculates node distance from the root in an "pruningwise" tree
transf.branch.lengths

Creates a tree with branch lengths to represent the 3-point structure of a covariance matrix
rbinTrait

Binary trait simulation
phyloglm

Phylogenetic Generalized Linear Model
phylolm-package

Phylogenetic Linear Regression
pruningwise.branching.times

Calculates internal node ages in an ultrametric "pruningwise" tree
three.point.compute

Computations with a (generalized) three-point structured tree