phylopath (version 1.4.0)

plot.phylopath_summary: Plot the comparison of a set of causal models.

Description

Shows the relative support for each causal model as a bar chart of model weights, ordered from best to worst. Models within cut_off CICc of the best model are highlighted, since those are usually considered to have comparable support. Each bar is labelled with the p-value of the d-separation test, where a significant value means the model is rejected by the data.

Usage

# S3 method for phylopath_summary
plot(x, cut_off = 2, ...)

Value

A ggplot object.

Arguments

x

A phylopath_summary object, obtained by calling summary() on the result of phylo_path().

cut_off

The CICc difference within which models are highlighted as having support comparable to the best model.

...

Not used.

Examples

  candidates <- define_model_set(
    A = NL ~ BM,
    B = NL ~ LS,
    .common = c(LS ~ BM, DD ~ NL)
  )
  p <- phylo_path(candidates, rhino, rhino_tree)
  plot(summary(p))