plot_structure

a matrix of phyloregion of probabilities of each species

omega

a polygon shapefile of grid cells with a column labeled
&#8220;grids&#8221;.

Specification of the column used for grouping.

Further arguments passed to or from other methods.

&#8230;

Visualize biogeographic patterns using structure plots

Computational infrastructure for biogeography, community ecology,
and biodiversity conservation (Daru et al. 2020) <doi:10.1111/2041-210X.13478>.
It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>.
The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013>
on patterns and processes of biogeographical regionalization. Additionally, the package
contains fast and efficient functions to compute more standard conservation measures
such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness
and global endangerment, as well as compositional turnover (e.g., beta diversity).

Barnabas H. Daru

phyloregion

Biogeographic Regionalization and Macroecology

Piyal Karunarathne

Klaus Schliep

Xiaobei Zhao

Albin Sandelin

Luciano Pataro

plot_structure function

<dl><dt>omega</dt>
<dd>a matrix of phyloregion of probabilities of each species</dd>
<dt>shp</dt>
<dd>a polygon shapefile of grid cells with a column labeled
&#8220;grids&#8221;.</dd>
<dt>by</dt>
<dd>Specification of the column used for grouping.</dd>
<dt>col</dt>
<dd>List of colors for the pies.</dd>
<dt>...</dt>
<dd>Further arguments passed to or from other methods.</dd></dl>

Arguments

Visualize biogeographic patterns using structure plots — plot_structure

<dl>

<dt>omega</dt>
<dd>a matrix of phyloregion of probabilities of each species</dd>


<dt>shp</dt>
<dd>a polygon shapefile of grid cells with a column labeled
&#8220;grids&#8221;.</dd>


<dt>by</dt>
<dd>Specification of the column used for grouping.</dd>


<dt>col</dt>
<dd>List of colors for the pies.</dd>


<dt>...</dt>
<dd>Further arguments passed to or from other methods.</dd>

</dl>

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plot_structure: Visualize biogeographic patterns using structure plots

Description

Usage

Value

Arguments