get_clades

<code>get_clades</code> returns the tips that descend from a given node or time
depth on a dated phylogenetic tree.

bioregion

Computational infrastructure for biogeography, community ecology,
and biodiversity conservation (Daru et al. 2020) <doi:10.1111/2041-210X.13478>.
It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>.
The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013>
on patterns and processes of biogeographical regionalization. Additionally, the package
contains fast and efficient functions to compute more standard conservation measures
such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness
and global endangerment, as well as compositional turnover (e.g., beta diversity).

Barnabas H. Daru

phyloregion

Biogeographic Regionalization and Macroecology

Piyal Karunarathne

Klaus Schliep

Xiaobei Zhao

Albin Sandelin

Luciano Pataro

get_clades function

<dl><dt>tree</dt>
<dd>is a dated phylogenetic tree with branch lengths stored
as a phylo object (as in the <code>ape</code> package).</dd>
<dt>cut</dt>
<dd>the slice time</dd>
<dt>k</dt>
<dd>number of slices</dd></dl>

Arguments

Get descendant nodes of phylogeny at a given time depth — get_clades

<dl>

<dt>tree</dt>
<dd>is a dated phylogenetic tree with branch lengths stored
as a phylo object (as in the <code>ape</code> package).</dd>


<dt>cut</dt>
<dd>the slice time</dd>


<dt>k</dt>
<dd>number of slices</dd>

</dl>

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get_clades: Get descendant nodes of phylogeny at a given time depth

Description

Usage

Value

Arguments

References

Examples