nodepie

Label phylogenetic nodes using pie

Computational infrastructure for biogeography, community ecology,
and biodiversity conservation (Daru et al. 2020) <doi:10.1111/2041-210X.13478>.
It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>.
The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013>
on patterns and processes of biogeographical regionalization. Additionally, the package
contains fast and efficient functions to compute more standard conservation measures
such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness
and global endangerment, as well as compositional turnover (e.g., beta diversity).

Barnabas H. Daru

phyloregion

Biogeographic Regionalization and Macroecology

Piyal Karunarathne

Klaus Schliep

Xiaobei Zhao

Albin Sandelin

Luciano Pataro

nodepie function

<dl><dt>pie</dt>
<dd>Estimates from ancestral character reconstruction</dd>
<dt>radius</dt>
<dd>Radius of the pie</dd>
<dt>pie_control</dt>
<dd>The list of control parameters to be passed into
the add.pie function.</dd>
<dt>legend</dt>
<dd>Logical, whether to add a legend or not.</dd>
<dt>col</dt>
<dd>List of colors for the pies.</dd>
<dt>...</dt>
<dd>Further arguments passed to or from other methods.</dd></dl>

Arguments

Label phylogenetic nodes using pie — nodepie

<dl>

<dt>pie</dt>
<dd>Estimates from ancestral character reconstruction</dd>


<dt>radius</dt>
<dd>Radius of the pie</dd>


<dt>pie_control</dt>
<dd>The list of control parameters to be passed into
the add.pie function.</dd>


<dt>legend</dt>
<dd>Logical, whether to add a legend or not.</dd>


<dt>col</dt>
<dd>List of colors for the pies.</dd>


<dt>...</dt>
<dd>Further arguments passed to or from other methods.</dd>

</dl>

nodepie: Label phylogenetic nodes using pie

Description

Usage

Value

Arguments