phylosamp

phylosamp-package

Implements novel tools for estimating sample sizes needed for phylogenetic studies, including studies focused on estimating the probability of true pathogen transmission between two cases given phylogenetic linkage and studies focused on tracking pathogen variants at a population level. Methods described in Wohl, Giles, and Lessler (2021) and in Wohl, Lee, DiPrete, and Lessler (2023).

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Implements novel tools for estimating sample sizes needed for phylogenetic studies, including
studies focused on estimating the probability of true pathogen transmission between two cases given phylogenetic linkage and studies focused on tracking pathogen variants at a population level. Methods described in Wohl, Giles, and Lessler (2021) and in Wohl, Lee, DiPrete, and Lessler (2023).

Justin Lessler

Sample Size Calculations for Molecular and Phylogenetic Studies

Shirlee Wohl

Elizabeth C Lee

Lucy D'Agostino McGowan

John R Giles

phylosamp-package function

Maintainer: Justin Lessler <a href="/link/jlessler%40unc.edu?package=phylosamp&version=1.0.1" data-mini-rdoc="phylosamp::jlessler@unc.edu">jlessler@unc.edu</a>
Authors:<ul>
<li>Shirlee Wohl <a href="/link/swohl%40scripps.edu?package=phylosamp&version=1.0.1" data-mini-rdoc="phylosamp::swohl@scripps.edu">swohl@scripps.edu</a> [contributor]</li>
<li>Elizabeth C Lee <a href="/link/elizabeth.c.lee%40jhu.edu?package=phylosamp&version=1.0.1" data-mini-rdoc="phylosamp::elizabeth.c.lee@jhu.edu">elizabeth.c.lee@jhu.edu</a> [contributor]</li>
<li>Lucy D'Agostino McGowan <a href="/link/lucydagostino%40gmail.com?package=phylosamp&version=1.0.1" data-mini-rdoc="phylosamp::lucydagostino@gmail.com">lucydagostino@gmail.com</a> (<a href="https://orcid.org/0000-0002-6983-2759">ORCID</a>) [contributor]</li>
<li>John R Giles <a href="/link/jrgiles%40uw.edu?package=phylosamp&version=1.0.1" data-mini-rdoc="phylosamp::jrgiles@uw.edu">jrgiles@uw.edu</a> [contributor]</li>
</ul>

Author

phylosamp: Sample Size Calculations for Molecular and Phylogenetic Studies — phylosamp-package

Maintainer: Justin Lessler <a href='mailto:jlessler@unc.edu'>jlessler@unc.edu</a>
Authors:<ul>
<li>Shirlee Wohl <a href='mailto:swohl@scripps.edu'>swohl@scripps.edu</a> [contributor]</li>
<li>Elizabeth C Lee <a href='mailto:elizabeth.c.lee@jhu.edu'>elizabeth.c.lee@jhu.edu</a> [contributor]</li>
<li>Lucy D'Agostino McGowan <a href='mailto:lucydagostino@gmail.com'>lucydagostino@gmail.com</a> (<a href='https://orcid.org/0000-0002-6983-2759'>ORCID</a>) [contributor]</li>
<li>John R Giles <a href='mailto:jrgiles@uw.edu'>jrgiles@uw.edu</a> [contributor]</li>
</ul>

phylosamp-package: phylosamp: Sample Size Calculations for Molecular and Phylogenetic Studies

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