as_phylo4d

Convert output from package phylosem to phylo4d object from package phylobase

Applies phylogenetic comparative methods (PCM) and phylogenetic trait imputation using
structural equation models (SEM), extending methods from Thorson et al. (2023) <doi:10.1111/2041-210X.14076>.
This implementation includes a minimal set of features, to
allow users to easily read all of the documentation and source code. PCM using SEM
includes phylogenetic linear models and structural equation models as nested submodels,
but also allows imputation of missing values. Features and comparison with other packages
are described in Thorson and van der Bijl (2023) <doi:10.1111/jeb.14234>.

James Thorson

phylosem

Phylogenetic Structural Equation Model

Wouter van der Bijl

as_phylo4d function

<dl><dt>object</dt>
<dd>Output from <code>phylosem</code></dd>
<dt>what</dt>
<dd>Select what to convert (Estimate / Std. Error).</dd></dl>

Arguments

Convert phylosem to phylo4d — as_phylo4d

<dl>

<dt>object</dt>
<dd>Output from <code>phylosem</code></dd>


<dt>what</dt>
<dd>Select what to convert (Estimate / Std. Error).</dd>

</dl>

as_phylo4d: Convert phylosem to phylo4d

Description

Usage

Value

Arguments

Details