best.compare_phylosem

Applies phylogenetic comparative methods (PCM) and phylogenetic trait imputation using
structural equation models (SEM), extending methods from Thorson et al. (2023) <doi:10.1111/2041-210X.14076>.
This implementation includes a minimal set of features, to
allow users to easily read all of the documentation and source code. PCM using SEM
includes phylogenetic linear models and structural equation models as nested submodels,
but also allows imputation of missing values. Features and comparison with other packages
are described in Thorson and van der Bijl (2023) <doi:10.1111/jeb.14234>.

James Thorson

phylosem

Phylogenetic Structural Equation Model

Wouter van der Bijl

best.compare_phylosem function

<dl><dt>x</dt>
<dd>output from <code>compare_phylosem</code></dd></dl>

Arguments

Extract best fitted model — best.compare_phylosem

<dl>

<dt>x</dt>
<dd>output from <code>compare_phylosem</code></dd>

</dl>

best.compare_phylosem: Extract best fitted model

Description

Usage

Value

Arguments