import_mothur_groups

A character string indicating
 the location of the mothur-produced group file in
 which the sample-source of each sequence is recorded. See
 <code>http://www.mothur.org/wiki/Make.group</code>

mothur_group_file

The data.frame object returned by this function is not
 immediately useable by other phyloseq functions,
 and must be first parsed in conjunction with a separate
 mothur <code>"list"</code> file. This function is made
 accessible to phyloseq users for troubleshooting
 and inspection, but the <code>link{import_mothur()}</code>
 function is suggested if the goal is to import the OTU
 clustering results from mothur into
 phyloseq. You will need both a group file and a
 list file for that end.

internal

phyloseq provides a set of classes and tools
to facilitate the import, storage, analysis, and
graphical display of microbiome census data.

import_mothur_groups: Parse mothur group file into a simple hash table.

Description

Usage

Arguments

Value

See Also