import_*links below. Each clustering tool / package / pipeline has its own idiosyncratic set of file names / types, and it remains the responsibility of the user to understand which file-path should be provided to each argument for the particular importing submethod. This method merely provides a central documentation and method-name, and the arguments are passed along as-is.
c("mothur", "pyrotagger", "QIIME", "RDP"), and only the first letter is necessary.
phyloseq-classwill be returned, though the included component data will vary by pipeline/tool, and also by the types of data files provided. The expected behavior is to return the most-comprehensive object possible, given the provided arguments and pipeline/tool.
For mothur, see:
For PyroTagger, see:
For QIIME legacy format, see:
For RDP pipeline, see:
## See documentation of a specific import function