import_env_file

(Required). A charater string of the ENV filename (relative or absolute)

envfilename

(Optional). <code><a href="/link/phylo-class?package=phyloseq&version=1.16.2" rd-options="" data-mini-rdoc="phyloseq::phylo-class">phylo-class</a></code> object to be paired with
the output otu_table.

tree

A character string indicating the delimiter used in the file.
The default is <code>"\t"</code>.

Additional parameters passed on to <code><a href="/link/read.table?package=phyloseq&version=1.16.2" rd-options="" data-mini-rdoc="phyloseq::read.table">read.table</a></code>.

Convenience wrapper function to read the environment-file, as formatted for 
input to the UniFrac server (<url>http://bmf2.colorado.edu/unifrac/</url>).
The official format of these files is that
each row specifies (in order) the sequence name, source sample, and (optionally)
the number of times the sequence was observed.

phyloseq provides a set of classes and tools
    to facilitate the import, storage, analysis, and
    graphical display of microbiome census data.

Paul McMurdie

phyloseq

Handling and analysis of high-throughput microbiome
    census data

import_env_file function

(Optional). <code><a href="phylo-class" rd-options="">phylo-class</a></code> object to be paired with
the output otu_table.

Additional parameters passed on to <code><a href="read.table" rd-options="">read.table</a></code>.

import_env_file: Read a UniFrac-formatted ENV file.

Description

Usage

Arguments

Value

References

See Also

Examples