phylosim (version 3.0.5)

PSRoot: The root class for all phylosim objects

Description

The root class for all phylosim objects containig some utility methods. Package: Class PSRoot

Object ~~| ~~+--PSRoot

Directly known subclasses: Alphabet, AminoAcidAlphabet, AminoAcidSequence, AminoAcidSubst, AnyAlphabet, BinaryAlphabet, BinarySequence, BinarySubst, BrownianInsertor, CodonAlphabet, CodonSequence, CodonSubst, CodonUNREST, ContinuousDeletor, ContinuousInsertor, DiscreteDeletor, DiscreteInsertor, ECMrest, ECMunrest, Event, F81, F84, FastFieldDeletor, GTR, GY94, GeneralDeletor, GeneralInDel, GeneralInsertor, GeneralSubstitution, HKY, JC69, JTT, JTT.dcmut, K80, K81, LG, MtZoa, NucleotideAlphabet, NucleotideSequence, PAM, PAM.dcmut, PhyloSim, Process, QMatrix, Sequence, Site, T92, TN93, ToleranceSubstitution, UNREST, WAG, cpREV, mtArt, mtMam, mtREV24

public static class PSRoot extends Object

Usage

PSRoot(...)

Arguments

...

Not used.

Fields and Methods

Methods:

	checkConsistency	-
	enableVirtual	-
	getComments	-
	getMethodsList	-
	globalConsistencyCheck	-
	intersect.list	-
	is	-
	is.na	-
	ll	-
	my.all.equal	-
	plot	-
	setComments	-
	setMethodsList	-
	summary	-
	virtualAssignmentForbidden	-

Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save

See Also

Object

Examples

# NOT RUN {
		obj<-PSRoot();
		ll(obj);
 
# }