phylosim (version 3.0.5)

buildFromPAML.AminoAcidSubst: Build rate matrix from PAML file

Description

Build rate matrix from PAML file.

Usage

# S3 method for AminoAcidSubst
buildFromPAML(this, paml.file, ...)

Arguments

this

An AminoAcidSubst object.

paml.file

Path to the PAML file.

...

Not used.

Value

The AminoAcidSubst object (invisible).

See Also

For more information see AminoAcidSubst.

Examples

# NOT RUN {
	# create an object
	p<-AminoAcidSubst()
	# build rate matrix from paml file
	# buildFromPAML(p,"path_to_paml_file")	# do not run this
	# get object summary
	summary(p)
 
# }