phylosim (version 3.0.5)

buildFromPAML.CodonSubst: Build rate matrix from PAML file

Description

Build rate matrix from PAML file.

Usage

# S3 method for CodonSubst
buildFromPAML(this, paml.file, ...)

Arguments

this

A CodonSubst object.

paml.file

Path to the PAML file.

...

Not used.

Value

The CodonSubst object (invisible).

See Also

For more information see CodonSubst.

Examples

# NOT RUN {
	# create an object
	p<-CodonSubst()
	# build rate matrix from paml file
	# buildFromPAML(p,"path_to_paml_file")	# do not run this
	# get object summary
	summary(p)
 
# }