checkConsistency.GeneralSubstitution

GeneralSubstitution.checkConsistency

checkConsistency,GeneralSubstitution-method

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An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions. Citation: Botond Sipos, Tim Massingham, Gregory E Jordan and Nick Goldman (2011) PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment <doi:10.1186/1471-2105-12-104>.

Botond Sipos

phylosim

Flexible Simulations of Biological Sequence Evolution

checkConsistency.GeneralSubstitution function

Check object consistency — checkConsistency.GeneralSubstitution

Check object consistency

checkConsistency.GeneralSubstitution: Check object consistency

Description

Usage

Arguments

Value

See Also