phylosim (version 3.0.5)

getBaseFreqs.HKY: Get the base frequency parameters

Description

Get the base frequency parameters.

The order of the frequency parameters must match with the order of symbols in the NucleotideAlphabet objects.

Usage

# S3 method for HKY
getBaseFreqs(this, ...)

Arguments

this

An HKY object.

...

Not used.

Value

A matrix containing the base frequency parameters.

See Also

For more information see HKY.

Examples

# NOT RUN {
	# construct object
	p<-HKY()
	# set/get base frequency parameters
	setBaseFreqs(p,c(2,1,2,1)/6)
	getBaseFreqs(p)
	# set/get base frequency parameters via virtual field
	p$baseFreqs<-c(4,4,1,1)/10
	p$baseFreqs
	# get object summary
	summary(p)
 
# }