getCumulativeRates.Sequence

Sequence.getCumulativeRates

getCumulativeRates,Sequence-method

this

<p>Get the total site rates from a Sequence object.
	This method simply calls <code>getCumulativeRatesFromRange(this)</code>.
	See <code>getCumulativeRates.Sequence</code> for more details.</p>

An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions. Citation: Botond Sipos, Tim Massingham, Gregory E Jordan and Nick Goldman (2011) PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment <doi:10.1186/1471-2105-12-104>.

Botond Sipos

phylosim

Flexible Simulations of Biological Sequence Evolution

getCumulativeRates.Sequence function

Get the total site rates from a Sequence object — getCumulativeRates.Sequence

Get the total site rates from a Sequence object

getCumulativeRates.Sequence: Get the total site rates from a Sequence object

Description

Usage

Arguments

Value

See Also