getEventsAtSite.GY94

GY94.getEventsAtSite

getEventsAtSite,GY94-method

this

A Site object. The GY94 object must be attached to the Site object.

target.site

Generate the list of active Event objects for a given attached Site object.
This method is almost an exact duplicate of the getEventsAtSite.GeneralSubstitution,
 with the exception of the portions dealing with the omega site-process specific parameter.

An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions. Citation: Botond Sipos, Tim Massingham, Gregory E Jordan and Nick Goldman (2011) PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment <doi:10.1186/1471-2105-12-104>.

getEventsAtSite.GY94: Generate the list of active Event objects for a given attached Site object

Description

Usage

Arguments

Value

See Also