getRateMultipliers.Sequence

Sequence.getRateMultipliers

getRateMultipliers,Sequence-method

this

process

<p>An integer vector specifying a set of positions. It is set to 1:seq$length if omitted.</p>

index

<p>Get the values of the rate multiplier parameters for a given Process object and a collection of Site  object aggregated by a Sequence object.
	This method just calls <code>getParameterAtSites(this=this,process=process,id="rate.multiplier",index=index)</code> See getParameterAtSites.Sequence for details.</p>

An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions. Citation: Botond Sipos, Tim Massingham, Gregory E Jordan and Nick Goldman (2011) PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment <doi:10.1186/1471-2105-12-104>.

Botond Sipos

phylosim

Flexible Simulations of Biological Sequence Evolution

getRateMultipliers.Sequence function

Get the values of the rate multiplier parameters for a given Process object and a collection of Site  object aggregated by a Sequence object — getRateMultipliers.Sequence

Get the values of the rate multiplier parameters for a given Process object and a collection of Site  object aggregated by a Sequence object

getRateMultipliers.Sequence: Get the values of the rate multiplier parameters for a given Process object and a collection of Site object aggregated by a Sequence object

Description

Usage

Arguments

Value

See Also