newAAMatrix.AminoAcidSubst

AminoAcidSubst.newAAMatrix

newAAMatrix,AminoAcidSubst-method

name

paml.file

equ.dist

An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions. Citation: Botond Sipos, Tim Massingham, Gregory E Jordan and Nick Goldman (2011) PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment <doi:10.1186/1471-2105-12-104>.

Botond Sipos

phylosim

Flexible Simulations of Biological Sequence Evolution

newAAMatrix.AminoAcidSubst function

Undocumented method — newAAMatrix.AminoAcidSubst

Undocumented method

newAAMatrix.AminoAcidSubst: Undocumented method

Description

Usage

Arguments

Value

See Also