phylosim (version 3.0.5)

setBaseFreqs.GTR: Set the base frequency parameters

Description

Set the base frequency parameters.

The order of the frequency parameters must match with the order of symbols in the NucleotideAlphabet objects.

Usage

# S3 method for GTR
setBaseFreqs(this, value, ...)

Arguments

this

A GTR object.

value

A vector of base frequencies.

...

Not used.

Value

value (invisible)

See Also

For more information see GTR.

Examples

# NOT RUN {
	# construct a GTR object
	p<-GTR()
	# set/get base frequency parameters
	setBaseFreqs(p,c(2,1,2,1)/6)
	getBaseFreqs(p)
	# set/get base frequency parameters via virtual field
	p$baseFreqs<-c(4,4,1,1)/10
	p$baseFreqs
	# get object summary
	summary(p)
 
# }