setTransTable.CodonAlphabet

CodonAlphabet.setTransTable

setTransTable,CodonAlphabet-method

this

value

<p>Forbidden action: setting the genetic code table for a CodonAlphabet object.
	Use the <code>table.id</code> constructor argument to set the genetic code.</p>

An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions. Citation: Botond Sipos, Tim Massingham, Gregory E Jordan and Nick Goldman (2011) PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment <doi:10.1186/1471-2105-12-104>.

Botond Sipos

phylosim

Flexible Simulations of Biological Sequence Evolution

setTransTable.CodonAlphabet function

Forbidden action: setting the genetic code table for a CodonAlphabet object — setTransTable.CodonAlphabet

Forbidden action: setting the genetic code table for a CodonAlphabet object

setTransTable.CodonAlphabet: Forbidden action: setting the genetic code table for a CodonAlphabet object

Description

Usage

Arguments

Value

See Also