setUniqueAlphabets.Sequence

Sequence.setUniqueAlphabets

setUniqueAlphabets,Sequence-method

this

value

<p>Forbidden action: setting the list of unique Alphabet objects attached to the Site object aggregated by a Sequence object.</p>

An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions. Citation: Botond Sipos, Tim Massingham, Gregory E Jordan and Nick Goldman (2011) PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment <doi:10.1186/1471-2105-12-104>.

Botond Sipos

phylosim

Flexible Simulations of Biological Sequence Evolution

setUniqueAlphabets.Sequence function

Forbidden action: setting the list of unique Alphabet objects attached to the Site object aggregated by a Sequence object — setUniqueAlphabets.Sequence

Forbidden action: setting the list of unique Alphabet objects attached to the Site object aggregated by a Sequence object

setUniqueAlphabets.Sequence: Forbidden action: setting the list of unique Alphabet objects attached to the Site object aggregated by a Sequence object

Description

Usage

Arguments

Value

See Also