# NOT RUN {
# Create a PhyloSim object.
# Provide the phylo object
# and the root sequence.
sim<-PhyloSim(
name="TinySim",
phylo=rcoal(3),
root.seq=NucleotideSequence(string="ATG",processes=list(list(JC69())))
);
# get a summary
summary(sim)
# }
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