phylotate v1.3

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Phylogenies with Annotations

Functions to read and write APE-compatible phylogenetic trees in NEXUS and Newick formats, while preserving annotations.

Functions in phylotate

Name Description
write_annotated Write an annotated phylogenetic tree to a file
parse_annotated Parse an annotated phylogenetic tree
print_annotated Serialize an annotated phylogenetic tree
finches NEXUS data example
read_annotated Read an annotated phylogenetic tree
phylotate-package Phylogenies with Annotations
mb_attrs Parse MrBayes-supplied attributes from a NEXUS file
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Details

Date 2019-06-29
License MIT + file LICENSE
Collate 'utility.R' 'tokenize.R' 'newick.R' 'nexus.R' 'format.R' 'mbattrs.R'
NeedsCompilation no
Packaged 2019-06-29 00:42:39 UTC; dlbeer
Repository CRAN
Date/Publication 2019-06-29 21:00:03 UTC
suggests ape
depends R (>= 3.0.0)
Contributors Daniel Beer, Anusha Beer

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