phylotate v1.3
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Phylogenies with Annotations
Functions to read and write APE-compatible phylogenetic
trees in NEXUS and Newick formats, while preserving annotations.
Functions in phylotate
| Name | Description | |
| write_annotated | Write an annotated phylogenetic tree to a file | |
| parse_annotated | Parse an annotated phylogenetic tree | |
| print_annotated | Serialize an annotated phylogenetic tree | |
| finches | NEXUS data example | |
| read_annotated | Read an annotated phylogenetic tree | |
| phylotate-package | Phylogenies with Annotations | |
| mb_attrs | Parse MrBayes-supplied attributes from a NEXUS file | |
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Details
| Date | 2019-06-29 |
| License | MIT + file LICENSE |
| Collate | 'utility.R' 'tokenize.R' 'newick.R' 'nexus.R' 'format.R' 'mbattrs.R' |
| NeedsCompilation | no |
| Packaged | 2019-06-29 00:42:39 UTC; dlbeer |
| Repository | CRAN |
| Date/Publication | 2019-06-29 21:00:03 UTC |
| suggests | ape |
| depends | R (>= 3.0.0) |
| Contributors | Daniel Beer, Anusha Beer |
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