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Welcome to the Homepage of R Package phylotools

phylotools is an R package, to install it, please use the following command in R:

library(devtools)

install_github("helixcn/phylotools")

If you haven't had devtools installed, please install it by typing "install.packages("devtools")" in R console.

Please feel free to send an email to the package maintainer Dr. Jinlong Zhang if you have any question or comments about this package.

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Version

Install

install.packages('phylotools')

Monthly Downloads

521

Version

0.2.2

License

GPL-2

Issues

Pull Requests

Stars

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Maintainer

Jinlong Zhang

Last Published

December 10th, 2017

Functions in phylotools (0.2.2)

dat2phylip

Conver the data frame to sequential PHYLIP format file
read.fasta

Read FASTA file
clean.fasta.name

Clean the name of a fasta file
read.phylip

read phylip file
dat2fasta

Convert and Save sequence data frame to fasta file
rename.fasta

Rename the sequences for a fasta file
rm.sequence.fasta

Delete sequences from fasta file
phylotools-package

Phylogenetic tools for building PHYLIP supermatrix and more
get.fasta.name

get the names of all the sequences of fasta file
split_dat

grouping the data frame containing sequences and names and generate fasta file
sub.taxa.label

Substitute the tip labels of a phylogenetic tree
get.phylip.name

get the names of sequences from a PHYLIP file
supermat

Build PHYLIP supermatrix and RAxML partition file using aligned FASTA or PHYLIP files.