Dist2WR: Compute gene x species matrix from the result of Distatis
Description
Dist2WR computes the 2WR matrix from the results obtaind with DistatisFast
(the fast version of distatis). For internal use mostly.
Usage
Dist2WR(Distatis)
Value
A matrix (gene=rows x species=col). Each cell represents a
gene/species pair, whose value represents the distance between (i) the position of this species
in this gene tree and (ii) the average position of this species in all other gene trees.
data(carnivora)
matrices<-phylter(carnivora, InitialOnly=TRUE, parallel=FALSE)$matrices
ds<-DistatisFast(matrices, parallel = FALSE)
WR<-Dist2WR(ds) #returns the gene x species matrix