carnivora

<p>This dataset contains 125 carnivora gene trees for 53 carnivora species. 
It is a subset of the dataset used in Allio et al. (2021), obtained 
by randomly selecting 125 genes for which all 53 species were present.</p>

datasets

Analyzis and filtering of phylogenomics datasets.
It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identify
what species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) <doi:10.1101/2021.09.08.459421>), a generalization of classical multidimensional scaling to multiple distance matrices.

Aurélie Siberchicot

phylter

Detect and Remove Outliers in Phylogenomics Datasets

Damien M. de Vienne

Stéphane Dray

Théo Tricou

carnivora function

<p>A list of named trees of class multiPhylo</p>

Format

125 genes trees for 53 carnivora species — carnivora

125 genes trees for 53 carnivora species

carnivora: 125 genes trees for 53 carnivora species

Description

Usage

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References

Examples