print.phylterinitial

Print on screen a simple description of the content of objects of class <code>phylterinitial</code>.

Analyzis and filtering of phylogenomics datasets.
It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identify
what species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) <doi:10.1101/2021.09.08.459421>), a generalization of classical multidimensional scaling to multiple distance matrices.

Aurélie Siberchicot

phylter

Detect and Remove Outliers in Phylogenomics Datasets

Damien M. de Vienne

Stéphane Dray

Théo Tricou

print.phylterinitial function

<dl><dt>x</dt>
<dd>Object present in the <code>$initial</code> element of the object returned by function <code>phylter()</code>.</dd>
<dt>...</dt>
<dd>Additional arguments.</dd></dl>

Arguments

print objects of class phylterinitial — print.phylterinitial

<dl>

<dt>x</dt>
<dd>Object present in the <code>$initial</code> element of the object returned by function <code>phylter()</code>.</dd>


<dt>...</dt>
<dd>Additional arguments.</dd>

</dl>

print.phylterinitial: print objects of class phylterinitial

Description

Usage

Value

Arguments

Examples