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phyreg (version 0.7)

Implements the Phylogenetic Regression of Grafen (1989)

Description

Provides general linear model facilities (single y-variable, multiple x-variables with arbitrary mixture of continuous and categorical and arbitrary interactions) for cross-species data. The theory is in A. Grafen (1989, Proc. R. Soc. B 326, 119-157) and aims to cope with both recognised phylogeny (closely related species tend to be similar) and unrecognised phylogeny (a polytomy usually indicates ignorance about the true sequence of binary splits).

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Version

Install

install.packages('phyreg')

Monthly Downloads

134

Version

0.7

License

GPL-2 | GPL-3

Maintainer

Alan Grafen

Last Published

February 8th, 2014

Functions in phyreg (0.7)

Seeing the parameter values

Prints the current parameter values for phyreg
Identifying higher nodes

Identifying higher nodes in an internal-format phylogeny
phyreg

Performs a phylogenetic regression
Example datasets

Example data
Translating phylogenies

Using phylogenies formatted in standard but "other" ways
phyreg-package

The Phylogenetic Regression of Grafen (1989)
inf

Provides information about the stored output of a call to phyreg()