posterior.evolrate

a phylogenetic tree in <code>"phylo"</code> format.

tree

mean or median shift-point from the posterior sample (see <code><a href="/link/minSplit?package=phytools&version=0.2-40" rd-options="" data-mini-rdoc="phytools::minSplit">minSplit</a></code>.

ave.shift

matrix <code>$mcmc</code> from <code>evol.rate.mcmc</code> (probably with burnin excluded).

mcmc

list of stips in state sig(1)^2 for each sampled generation of MCMC.

tips

optional logical value indicating whether or not to plot the stretched and shrunken tree generated by the pre-processing algorithm implemented in this function (default is <code>FALSE</code>).

showTree

This fucntion takes a phylogenetic tree, an average split position, and a raw MCMC output from <code>evol.rate.mcmc</code> and returns a posterior sample of evolutionary rates rootward ($\sigma(1)^2$) and tipward ($\sigma(2)^2$) from the average split.

phylogenetics

comparative method

Bayesian

phytools provides various functions for phylogenetic
        analysis, mostly relevant to comparative biology.

posterior.evolrate: Analysis of the posterior sample from evol.rate.mcmc

Description

Usage

Arguments

Value

References

See Also